TL;DR
Cytoscape Desktop MCP is a Model Context Protocol (MCP) server. Drive a running Cytoscape Desktop to load, lay out, and style biological networks. Source: https://github.com/cytoscape/cytoscape-desktop-mcp. It speaks the Model Context Protocol and works with any compatible client (Claude, Cursor, Cline, Windsurf, Warp and more).
Cytoscape Desktop MCP
Drive a running Cytoscape Desktop to load, lay out, and style biological networks.
Install Command
Frequently Asked Questions
Cytoscape Desktop MCP is a Model Context Protocol server that Drive a running Cytoscape Desktop to load, lay out, and style biological networks.
You can install it by running the install command: ``. It then becomes available to any MCP-compatible client such as Claude, Cursor, Cline, Windsurf, Warp.
The Cytoscape Desktop MCP MCP Server is compatible with any client that speaks the Model Context Protocol — including Claude, Cursor, Cline, Windsurf, Warp.
Check the project license on its repository before use.
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- Last Updated
- Aug 12, 2026
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Client Compatibility
Speaks the Model Context Protocol — works with any compatible client.